chr1:94014622:G>T Detail (hg38) (ABCA4)

Information

Genome

Assembly Position
hg19 chr1:94,480,178-94,480,178 View the variant detail on this assembly version.
hg38 chr1:94,014,622-94,014,622

HGVS

Type Transcript Protein
RefSeq NM_000350.2:c.5381C>A NP_000341.2:p.Ala1794Asp
Ensemble ENST00000370225.4:c.5381C>A ENST00000370225.4:p.Ala1794Asp
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic Likely pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 601691 OMIM
HGNC 34 HGNC
Ensembl ENSG00000198691 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2024-01-14 criteria provided, single submitter not provided germline not provided Detail
Likely pathogenic 2016-01-01 criteria provided, single submitter Severe early-childhood-onset retinal dystrophy germline Detail
Pathogenic 2019-08-16 criteria provided, single submitter Retinal dystrophy germline unknown Detail
Pathogenic Likely pathogenic 2021-01-30 criteria provided, multiple submitters, no conflicts Severe early-childhood-onset retinal dystrophy germline inherited unknown Detail
CIViC
[No Data.]
DisGeNET
[No Data.]
Annotation

Annotations

DescrptionSourceLinks
NM_000350.3(ABCA4):c.5381C>A (p.Ala1794Asp) AND not provided ClinVar Detail
NM_000350.2(ABCA4):c.[5381C>A;6148G>C] AND Severe early-childhood-onset retinal dystrophy ClinVar Detail
NM_000350.3(ABCA4):c.5381C>A (p.Ala1794Asp) AND Retinal dystrophy ClinVar Detail
NM_000350.3(ABCA4):c.5381C>A (p.Ala1794Asp) AND Severe early-childhood-onset retinal dystrophy ClinVar Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs61751406 dbSNP
Genome
hg38
Position
chr1:94,014,622-94,014,622
Variant Type
snv
Reference Allele
G
Alternative Allele
T
East Asian Chromosome Counts (ExAC)
8654
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121408
Allele Counts in All Race (ExAC)
3
Heterozygous Counts in All Race (ExAC)
3
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
2.471006852925672E-5
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